Discover the World of Single-Cell Sequencing with Gentaur  

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what is single cell sequencing ? 

Single-cell sequencing is a cutting-edge molecular biology technique that allows researchers  to analyze  the genetic and genomic information of individual cells within a complex biological sample. Unlike traditional sequencing methods that provide information about the average characteristics  of a cell population, single-cell sequencing offers insights into the genetic and functional diversamong individual cells. 

This technology has revolutionized our understanding of cellular heterogeneity  in various biological contexts, such as cancer research, neuroscience, immunology, and developmental biology.  It enables the identification of rare cell types, the study of cell-to-cell variability, and the discovery of novel cell subpopulations. Single-cell sequencing involves the isolation and sequencing of DNA or RNA from individual cells, and it can provide detailed information about gene expression, mutation analysis, epigenetics, and more at a single-cell level. This powerful tool has broad applications in both basic research and clinical studies, offering new perspectives and opportunities for breakthrough discoveries.

 


"Gentaur Molecular" offers a wide variety of products for single-cell sequencing

1. Single Cell 3' Transcriptome kit

SeekOne DD (Digital Droplet) Single Cell 3' Transcriptome-seq is a high-throughput single-cell RNA-seq library kit achieves single-cell partitioning and labelling by the microfluidic system and barcoded beads. The kit needs to be used with the SeekOneDigital Droplet System (SeekOneDD) to complete the whole process from single-cell transcriptome barcoding to library construction.

SeekOne DD single cell 3' transcriptome kit includes: SeekOne DD Chip S3 (Chip S3 for short), Gasket, Carrier Oil, SeekOne DD 3' Barcoded Beads (Barcoded Beads for short), amplification reagents, library construction reagents, and single cell data analysis software (SeekSoul Tools). Based on the principle of microfluidic technology, the kit uses emulsion droplets to separate and capture individual cells, and then recruits nucleic acid-modified Barcoded Beads to molecularly label RNA from different cell sources. Finally, a high-throughput single-cell transcriptome library compatible with Illumina and MGI sequencing system will be constructed, which can be used for research on tumors, immunity, cell development, viral infections, drug discovery, and target screening, etc.

Product

Product code

Specification

SeekOne® DD Single Cell 3’ Transcriptome-seq Kit, 2 tests/8 tests

K00202-02/K00202-08

8 tests


 

Highlights

1. Explore the expression of thousands of genes at the single cell level to gain new insights into cell states and subtypes.

2. Investigate the role of cellular heterogeneity in the biological system at the single cell level.

3. Detect differentially expressed genes between different cell populations to find significant genes, investigate relevant pathways, and explore cellular phenotypes.

4. Analyze cell dynamic  changes  in  various cellular states associated with a continuous process, such as differentiation, by performing trajectory analysis.

5. Address a variety of research needs in cancer, immunity, cell development, viral infection, drug discovery, and target screening.

More Details

Applications

Medical and Life Sciences:

1.  Construction of large-scale single cell atlases

2.    Identification of cell subpopulations/intermediate states/rare cell types

3.    Disease heterogeneity/microenvironment/drug resistance/progression

4.    Immune cell atlas and differentiation

5.    Reproduction/organic neuron/stem cell differentiation and development

6.    Disease typing/biomarker discovery 

Agronomy:

1.  Construction of cell atlas

2.   Cell differentiation and development

3.    Environmental stress, virus control and other mechanisms

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More Details

Workflow

 

 1. Single cell capture and labelling

 Cells and barcoded beads are added separately and then react in the carrier oil to form emulsion droplets in the -shaped channel. After that, mRNA molecules released by the cells are captured by oligo(dT) on the barcoded beads.

 2. Library Construction  

 


Product Features

Compatible

Compatible with single cell 3' transcriptome sequencing (3' scRNA-seq) and single nucleus RNA sequencing (snRNA-seq).

Dual index libraries compatible with both Illumina and MGI sequencers.


Fast

Rapid generation of 150,000 water-in-oil droplets in 3 minutes with high success rates, especially for precious and sensitive samples.

Cost-saving

Unique place chip design eliminates chip waste, reducing operation time and cost

Suitable sample types

a. Delicate samples with low cell viability:brain tissue, retinal tissue, all tissues from aged individuals 
b. Tissues requiring nuclei isolation: frozen tissues, pancreatic tissues, neurons, adipose tissue, etc. 
c. Large cohort or atlas studies where multiple samples need to be processed simultaneously.

Product Specifications

  • Rapidgenerationof150,000water-in-oildropletsin3minutes
  • Efficientlycapturing500-12,000cellsperchannel
  •  Flexiblerunningof1~8samplesinparallel
  • Cellsizeflexibility:celldiameterof5~40μm
  • Highcellcaptureratesofupto65%
  • Low doubletrates ofunder0.3%per1,000cells


Data Presentation


Sample Type

Estimated Number of Cells

Mean Reads per Cell

Median Genes per Cell

Number of Reads

Valid Barcodes

Sequencing Saturationn

Fraction reads in cells

Total Genes Detected

Median UMI Counts per Cell

Human-Fresh PBMCs

1,085

19,3061

2,116

209,664,853

94.54%

92.14%

77.19%

18,705

7,272

Human-Glioma

9,475

10,986

2,226

104,092,350

95.07%

30.26%

89.99%

26,004

4,527

Mouse- Subcutaneously Transplanted Tumor

 

9,506

 

37,866

 

2,906

 

359,953,834

95.99%

 

44.78%

 

82.99%

 

21,558

 

7,563

Mouse- Frozen Brain Tissue

9,025

9,848

998

88,873,704

94.65%

90.99%

76.22%

22,113

1,521

Human-Adipose Tissue

12,106

24880

1,122

301,197,280

93.89%

91.28%

75.54%

22,334

1,954


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